PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 452aa    MW: 50597.9 Da    PI: 9.1089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758230genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0578100123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y C++C++ F r  nL+ H r+H
  676758230  78 YICEICNQGFQRDQNLQMHRRRH 100
                89********************9 PP

2zf-C2H2163.3e-05156178123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k +  +s++k H++t+
  676758230 156 WVCEKCSKGYAVQSDYKAHLKTC 178
                58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.07E-575101No hitNo description
Gene3DG3DSA:3.30.160.601.3E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006578100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86678100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355160120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4147177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560156183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MRTDQGAVVM LDAATSNKNT SNTCCVVSSS SSDPFLSSSE NGVTTTNTST QKRKRRPADP  60
DAEVVSLSPR TLLESDRYIC EICNQGFQRD QNLQMHRRRH KVPWKLLKRD NNLEVKKRVY  120
VCPEPTCLHH DPCHALGDLV GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT  180
RGHSCDCGRV FSRVESFIEH QDNCSVRKVP REQPPPPQTP VTITACSSRT ASTASTPSSE  240
TNYGGSAVAV ATPLPLEGRP IQMRNSSSTP SILTNSSNLN LELQLLPLTP NQNPNQETHQ  300
HRVKEPFHHH HNHNHDTTNL NLSIAPSSSY HRYNNFDRIK EIMASEQIMK IAIKEKAYAE  360
EAKREAKRQR EIAENEFVNA KKIRQQAQSE LERAKLLKEQ SMKRISSTIM QVTCQTCKGQ  420
FQAVAIPAAA AADETSLVVS YMSSANTDGE GS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2267030.0AK226703.1 Arabidopsis thaliana mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL07-61-I21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713043.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_009114218.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE30.0IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A078ESU10.0A0A078ESU1_BRANA; BnaA09g18800D protein
STRINGBra017432.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.10.0C2H2-like zinc finger protein